A comprehensive guide to Laboratory Information Management Systems (LIMS)

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A comprehensive guide to Laboratory Information Management Systems (LIMS)


This Laboratory Information Management System (LIMS) Buyer’s Guide is brought to you by Scispot, a close-knit team of scientists, academics, and entrepreneurs who intimately understand the challenges associated with research. With our first hand experience, we are fueled by a deep passion for advancing scientific development. We believe in the transformative power of research and are dedicated to providing valuable resources that support and empower biotech startups and scaleups. Through our comprehensive LIMS Buyer's Guide and other initiatives, we strive to equip lab operations managers and biotech CEOs with the knowledge and insights needed to overcome obstacles, streamline their processes, and drive scientific progress. Overall, this guide will focus on important factors to consider when selecting a LIMS system and how it can be used to optimize your research and workflows.

What is LIMS?

Laboratory Information Management System (LIMS) is a specialized software designed to streamline and optimize various laboratory processes. It serves as a centralized platform that effectively manages and organizes data and information related to laboratory operations.

LIMS helps track and monitor samples in the lab from start to finish. This includes recording the sample's origin, storage location, and any changes or movements it undergoes during the testing process. LIMS tracks samples in real-time, ensuring proper handling and preventing mix-ups or errors.

In addition to sample tracking, LIMS also plays a crucial role in data collection. Lab staff can enter and save different data, like test results, observations, and quality control measurements. This data is easily accessible and retrievable, reducing the need for manual record-keeping and the risk of data loss.

Furthermore, LIMS facilitates data analysis and reporting. It helps labs analyze data, make graphs, and find patterns. This allows researchers and scientists to draw meaningful conclusions and make informed decisions based on the analyzed results. LIMS makes report creation easier, ensuring all important details are included and presented clearly and briefly.

By automating and streamlining various laboratory processes, LIMS significantly improves the efficiency and reliability of lab work. It eliminates the need for manual data entry and reduces the chances of human error, thereby enhancing the overall accuracy and consistency of results. Additionally, LIMS promotes collaboration and knowledge sharing among laboratory personnel by providing a centralized platform for data storage and access.

In conclusion, LIMS is a powerful software solution that revolutionizes laboratory management. Modern labs rely on this tool to track samples, collect data, analyze, and generate reports. By leveraging the capabilities of LIMS, laboratories can enhance their productivity, ensure data integrity, and ultimately contribute to scientific advancements and discoveries.

LIMS is like a digital helper in a science lab at a university or college. Imagine a lab filled with test tubes, microscopes, and computers. Scientists and students are busy with experiments, taking notes, and trying to keep track of everything.

Here's how it works in a lab:

  • LIMS records experiments. It notes what was done, by whom, and the results. It is similar to how a diary keeps track of daily activities.
  • Managing Samples: If the lab studies plants, each plant sample contains details such as its origin and characteristics. LIMS stores all this info, so it's easy to find and use.
  • Sharing Results: When scientists find something exciting, they share it with others. LIMS makes it easy to share data and findings with teammates or across different departments.


  1. Sample Management

LIMS systems streamline sample management processes by providing tools for accurate registration, tracking, and organization. This centralized approach allows laboratories to maintain comprehensive records of samples, including their origin, storage location, and associated metadata. LIMS systems also offer features for managing sample storage, including freezer management, ensuring proper storage conditions to preserve sample integrity. Moreover, LIMS systems facilitate proper sample disposal, adhering to regulatory guidelines and promoting responsible waste management practices.

  1. Workflow Management

With customizable workflow templates, laboratories can design and implement standardized protocols and procedures tailored to their specific requirements. Automated task assignment and tracking functionalities ensure efficient resource allocation and enable real-time monitoring of workflow progress. Furthermore, LIMS workflows facilitate seamless collaboration among team members, improving communication, coordination, and overall productivity in the laboratory.

Workflow management dashboard

  1. Data Management

LIMS systems excel in data management by providing a centralized repository for diverse data types generated in the laboratory. This consolidation eliminates scattered storage and enables easy retrieval and analysis. The structured data capture and management capabilities ensure standardized and consistent data entry practices, enhancing data organization and searchability. 

  1. Instrument Integration

Instrument integration in LIMS systems offers numerous benefits by automating data capture and improving data accuracy. By connecting laboratory instruments directly to the LIMS system, data transfer becomes automated and real-time, reducing manual effort and minimizing errors. LIMS enables the tracking of instrument calibration and maintenance schedules, allowing labs to proactively monitor instrument performance and ensure accurate and precise measurements. As a result, this integration promotes standardized data capture, including instrument-specific information and metadata.

  1. Quality Control and Compliance

LIMS systems provide robust quality control and compliance features to ensure adherence to regulatory standards and maintain high-quality data. With built-in quality control mechanisms, labs can validate and verify data accuracy, perform statistical analysis, and generate comprehensive quality control reports. LIMS also enables traceability and audit trails, allowing labs to track and document every step of the testing and analysis process, ensuring data integrity and compliance with regulatory requirements.

  1. Reporting

LIMS systems offer comprehensive reporting capabilities that summarize lab activities, test results, and trends. These customizable reports provide stakeholders with valuable insights into productivity, turnaround times, and resource allocation. By generating comprehensive reports and offering data analysis tools, LIMS facilitates effective decision-making, continuous improvement, and data-driven laboratory management.

Example report template

  1. Inventory and Resource Management

LIMS' inventory and resource management features offer laboratories real-time visibility into inventory quantities, enabling proactive procurement and preventing delays in testing and experiments. Automated alerts for low inventory levels ensure a continuous supply of materials, enhancing lab productivity and reducing project interruptions. Furthermore, LIMS systems optimize resource management by tracking the usage of reagents, supplies, and consumables, allowing for better control and informed decision-making. 

Example of dashboards in LIMS

How to Use LIMS

Implementing and using a LIMS effectively requires a strategic approach. Here's a step-by-step guide to harnessing the power of LIMS in your laboratory:

  1. Define Your Requirements: Start by identifying your laboratory's specific needs. Consider the types of samples you process, the data you need to collect, and any regulatory compliance requirements.
  2. Customize and Integrate: Select a LIMS that offers customization options to tailor the system to your unique workflows. Integration with existing laboratory instruments and software systems is crucial for seamless operation.
  3. Train your team: Make sure your lab staff know how to use the LIMS. This includes entering data, getting reports, and following the digital workflow.
  4. Monitor and Optimize: Once implemented, continuously monitor the system's performance. Collect feedback from users and make necessary adjustments to optimize workflows and increase efficiency.
  5. Prioritise security: Make sure the LIMS adhere to security controls in real time such as SOC2 and HIPAA controls.
  6. Build connected ontologies: Select a LIMS that offers completely connected chain of custody for your samples and experiment results. Some of the LIMS systems such as Scispot builds graphical ontologies to show the complete journey of your samples, inventory and experiment data.

Benefits of LIMS

  1. Improved Operational Efficiency

LIMS systems streamline workflows, reduces manual errors, and enhances productivity by optimizing resource utilization. This leads to faster turnaround times, increased throughput, and improved overall performance, enabling labs to handle higher volumes of samples and deliver results more efficiently. Additionally, enhanced operational efficiency reduces costs, maximizes profitability, and allows labs to allocate resources effectively, ultimately improving their competitive edge in the industry.

  1. Cost Savings and Return On Investment

Implementing a LIMS system can result in significant cost savings and a positive return on investment for laboratories. By increasing efficiency and productivity, labs can save valuable time and resources. The centralized data management and reporting capabilities of LIMS systems also enable data-driven decision-making and optimization of lab operations, further enhancing cost-effectiveness. Overall, the improved efficiency and productivity achieved with LIMS can lead to substantial cost savings and a favorable return on investment for laboratories.

  1. Enhanced Data Integrity and Accuracy:

Enhanced data integrity brings numerous advantages to laboratories. Firstly, it boosts the dependability and precision of laboratory results, minimizing the potential for errors and guaranteeing the production of high-quality data. Secondly, it instills trust in the data, both internally within the lab and externally among regulatory bodies and clients. This established confidence in the data strengthens the lab's reputation and credibility. Lastly, improved data integrity streamlines data analysis, interpretation, and reporting processes, empowering labs to extract valuable insights and make well-informed decisions based on trustworthy data.

  1. Regulatory Compliance and Quality Assurance

Compliance with regulatory standards and implementing robust quality assurance measures provide several advantages for laboratories. By adhering to regulations, labs avoid potential legal consequences and maintain a favorable reputation. Quality assurance practices enhance the accuracy and reliability of laboratory results, fostering trust among clients and stakeholders. Ultimately, regulatory compliance and quality assurance contribute to the overall success, credibility, and competitiveness of the lab in the industry.

  1. Facilitated Collaboration and Communication

LIMS systems promote effective communication and collaboration by facilitating seamless information sharing among laboratory personnel, teams, and departments. They enable the exchange of results, reports, and data, fostering smooth collaboration among relevant stakeholders. With user roles and permissions, labs can control data access and system functionalities based on individual user privileges, ensuring the security of sensitive information while enabling authorized users to efficiently perform their tasks.

Scispot OS has built in GxP compliance software with lims validation for your laboratory

Challenges of LIMS

Some LIMS systems may present challenges in terms of pricing, configurability, and scalability for labs. Pricing issues can arise when LIMS systems have high upfront costs or complex pricing structures that make it difficult for labs to budget or justify the investment. Some LIMS vendors may entice labs with a low starting price but later increase contract costs once the lab has transferred their data to the platform, potentially leading to unexpected financial burdens and higher total ownership costs. Additionally, limited configurability can hinder the system's ability to adapt to specific lab workflows and requirements, resulting in inefficiencies or the need for costly customizations. Scalability is another concern, as some LIMS systems may struggle to accommodate the growth or changing needs of labs, leading to limitations in expanding operations or integrating new technologies. These limitations highlight the importance of carefully evaluating LIMS options to ensure they align with the lab's budget, configurability needs, and future scalability goals.

Here’s a short list of considerations you should use when evaluating LIMS vendors:

  • Vendor reputation and experience
  • Product features and functionality
  • Configurability
  • Scalability
  • Integrability 
  • Implementation and support
  • Use cases

Advanced vs Traditional LIMS Systems

Evaluating an advanced LIMS compared to a traditional one is crucial to leverage the latest technology and capabilities that can significantly enhance laboratory operations. By assessing the differences between traditional and advanced LIMS systems, laboratories can make informed decisions to adopt a solution that aligns with their current and future needs, maximizing their productivity and staying ahead in a rapidly evolving scientific landscape.

Advanced LIMS: Scispot OS

  • Cloud-based deployment
  • Integration with IoT devices
  • Advanced data analytics and visualization
  • Machine learning and AI capabilities
  • Real-time monitoring and alerts
  • Integration with electronic medical records (EMRs)
  • Enhanced security and data encryption
  • API-driven integrations with third-party software
  • Workflow automation and customization
  • User-friendly and intuitive interfaces
  • Scalability and Configurability (no code)
  • Regulatory compliance tools and modules
  • Advanced analytics and data visualization tools

Traditional LIMS

  • On-premises installation
  • Limited or no IoT integration
  • Basic data reporting and visualization
  • Limited or no AI capabilities
  • Manual monitoring and notifications
  • Limited healthcare integration
  • Basic data security measures
  • Limited integration capabilities
  • Manual and rigid workflows
  • Outdated or complex user interfaces
  • Limited scalability and customization
  • Basic compliance features
  • Limited or no data visualization tools

LIMS Vendors


Scispot OS is an advanced laboratory management platform that combines the functionality of LIMS (Labsheets), ELN (Labspaces), advanced project management and data visualization tools. It offers a range of functionalities such as sample tracking, inventory management, and workflow automation. What sets Scispot OS apart are its innovative features, including a first-generation data lake interface that allows for flexible data storage and retrieval, and a user-friendly GUI that enables easy configuration and customization of the system. Scispot also excels in third-party lab integrations, facilitating seamless connections with external systems, instruments, and services to streamline laboratory workflows. Scispot OS' scalability and configurability make it a perfect fit for labs of all sizes, adapting to their evolving needs and promoting continuous growth. Overall, these unique capabilities make Scispot OS a powerful and adaptable solution for modern labs, enhancing data management, workflow efficiency, and collaboration.


  • Scispot OS’ integration capabilities and scalability make it a valuable tool for modern labs. The ability to connect with various lab instruments and systems streamlines workflows and improves data management.
  • Scispot provides a user-friendly interface while facilitating seamless collaboration and data sharing among lab personnel. Their custom dashboards for advanced analytics offer valuable insights which  are game-changers for data-driven decision-making.


  • Scispot has primarily attracted smaller companies as its clientele, positioning itself as a valuable solution for biotech startups and scaleups.
  • While Scispot has gained popularity among biotech startups and scaleups, it hasn't yet been widely adopted by big pharma companies.

“Scispot is very easy to integrate into our current system. It provided us with some ready-to-use workflows for automatically recording inventory, executing media recipes, and tracking a lot of the things that we do here. This raises our quality of work to a whole new level.”
~ Engineering Manager at Culture Biosciences

Scispot is the best modern tech stack with LIMS for food and beverage labs.

CGM Schuylab

CGM Schuylab is a traditional LIS solution that optimizes laboratory operations through functionalities like order entry, sample tracking, result reporting, and billing management. It integrates with various instruments and systems to facilitate automated data transfer and workflow connectivity. However, users with specific workflow requirements or the need for extensive customization may find the system's limited options challenging. Additionally, if the user interface or overall user experience does not meet expectations or is not user-friendly for laboratory staff, it may impact user satisfaction.


  • “CGM SCHUYLAB offers a range of modules to manage various aspects of laboratory operations, including sample tracking, testing workflows, result reporting.”
  • “The ease of use and the cost effectiveness. Support was very good and responded to my lab's needs quickly and efficiently.”


  • “it may not be suitable for all laboratory types and sizes, as it may be too complex or expensive for smaller labs.”
  • “There are some reports that I would like to customize for our lab and that was not an option.”

“While it may not be suitable for all laboratory types and sizes, CGM SCHUYLAB is a recommended option for those looking for a comprehensive and effective LIMS solution.” - Abhishek, Manager in India

Sapio Science

Sapio Sciences is a provider of laboratory informatics solutions. Their flagship product, Exemplar LIMS, is a LIMS system designed to streamline scientific workflows and data management. With Exemplar LIMS, labs can track samples, automate workflows, integrate data from various sources, and generate comprehensive reports. Some users note that certain features can be a bit clunky, and the setup process may take longer compared to other platforms. Navigating the system and locating specific items or settings can sometimes be confusing, with discrepancies between tutorials and the actual system. While Sapio Science provides powerful functionality, users may need to invest additional time and effort in familiarizing themselves with the platform to fully leverage its capabilities.


  • “The software works well for detailed requests and integration across sample types.”
  • “How easy and intuitive it is to write API's to integrate at specific invocation points. Not having to deal with front end developement is also a huge plus.”


  • “Some things can be a bit clunky at first or take longer to set up than on other platforms.”
  • “Sometimes trying to find what you need to change or where an item is can be confusing and the tutorials don't always match the system.”

“Keeps the lab and coordinated services from using Excel sheets!” - Eric B.


Dotmatics offers scientific informatics solutions and data management software for the life sciences industry. Their platform offers a range of capabilities including data visualization, data analysis, and laboratory information management. Dotmatics enables scientists to capture, manage, and analyze their research data to excel their R&D projects. However, some users have found certain administrative tasks to be intricate and time-consuming, requiring specific knowledge and support. Additionally, some customer reviews reflect concerns over the effectiveness of their data visualization tools.


  • “The user learning curve is minimal, even for a chemist not well-versed in informatics”
  • “It serves as a data umbrella that brings our chemical and biological data together.”


  • “It is "tinkery". Some of the things I have to do as an admin are surprisingly fussy and detailed. Ids have to be plucked from special places. The number of tables is amazing. Sometimes, there is no way to know where specific information comes from without pinging Support. It would help to have a schema and better tools for finding where values come from. Visualization is an issue. We had hopes for Blueprint, but it never panned out.”
  • “Dotmatics is a large company and the initial contacts felt slow to get off the ground in order to establish the business relationship”

“It took further time to get the cloud instance up and running and get an implementation team together. But what a team, so worth the wait!” - Verified User in Biotechnology


eLabInventory is a typical electronic system for managing laboratory inventory, including supplies, reagents, and equipment. It offers a centralized platform for tracking, organizing, and monitoring inventory, ensuring availability and minimizing stockouts. Laboratories can record item details, track quantities, set reorder points, and generate reports for streamlined inventory management. However, labs with highly specialized inventory needs or those requiring advanced control mechanisms may find eLabInventory's customization options and advanced features limited.


  • “The user-friendly interface allows for easy navigation and the comprehensive inventory management features make it simple to keep track of all laboratory equipment, chemicals, and samples.”
  • “How organized you can get, the charts and also the color system you can create depending sample types” 


  • “Some of the cons of eLabInventory as a laboratory inventory management software include limited integrations with other laboratory management software, limited reporting capabilities, and the software being subscription-based”
  • “view and editing tables is not integrated very well.”

“I have enjoy it very much. I was a used in 2020 and a lot has changed since so it will take some adjustment to all the new updates” - Kimberly, Lab Manager in US


CloudLIMS is a traditional cloud-based laboratory information management system that improves laboratory operations and data management. It provides a secure and scalable cloud environment for tracking and managing samples, workflows, and data. With CloudLIMS, laboratories can record sample information, track sample movement, and automate workflows. However, the system's complexity during setup and configuration may pose challenges for users unfamiliar with LIMS systems or cloud-based software. Additionally, limited customization options could make it difficult to adapt the system to highly specialized or unique laboratory workflows without extensive modifications.


  • ”The user interface is friendly to the users and it is quite colorful. Access tabs are easily accessible and it can be easily accessed from any web browser without a dedicated application.”
  • ”Able to adjust workflow accordingly to our business needs and requirements well”


  • ”Getting help from CloudLIMS to assist in support work and troubleshooting.”
  • ”I don't need or fully understand a handful of the options. Because there were so many options, I found it difficult to go in and customize forms or presentations, for example.”

“My experience with CloudLIMS is good, above average. The reason why I say this is that there are some issues, takes time to do the setup/implement and bugs that occur. But the software, customer service and the ability of customization is great. CloudLIMS has great potential to carry out all your basic task and become a better application especially because the people that work there listen to the customers and try to make it better for them.” - Verified LinkedIn User


Labguru is a research data management solution that includes basic ELN software, LIMS systems, informatics, inventory, and equipment management features. It is a cloud-based platform that ensures data security and compliance. Some users have reported occasional issues when trying to import a large amount of data, as the system can be slow, or the import may fail. Additionally, others have reported that the search function may occasionally fail to find all documents. Despite these challenges, Labguru remains a classic cloud-based platform that offers an all-in-one solution for managing lab operations and research data.


  • ”Interconnectivity of experiments, samples, reagents, and equipment, everything can be tracked down.”
  • ”We particularly appreciate the Excel spreadsheet tool and the possibility to connect an experiment to any other element inside LabGuru with the Linked Resources option.”


  • ”The price is above average in the market.”
  • ”The biggest con of this software is that it does not have a backup policy. You can physically store the pdf of the Labguru virtual notebook but what do you do for the data? The moment my lab or research group decides to quit Labguru, all the data will be lost. There are generations of work in Labguru that were saved by my other colleagues, all that would be gone.”

“I feel Labguru has its own set of advantages but at the same time, it has some risks associated with it. So, I believe the company should bring about some changes in its data backup policies, most importantly, to be in the competitive market.”  - Anindita, postdoctoral fellow in US


Benchling offers a standard LIMS system to help researchers manage their experiments, samples, and data on one principal platform. Benchling offers a wide range of molecular biology capabilities, including tools for DNA sequence design, plasmid construction, primer design, gene editing, sequence analysis, and molecular cloning. With features such as CRISPR design and optimization, protein engineering, and antibody design, Benchling supports various applications in molecular biology research and enables scientists to efficiently design and analyze experiments at the molecular level. However, the software has some limitations. One issue is that it restricts users from editing shared projects, which can be a hindrance for collaborative work. Another limitation is that the platform's integration with storage options for large data sets is limited, which may not meet the needs of some users, especially those in smaller laboratories. Benchling’s pricing becomes especially costly as a biotech company begins to scale. Despite these limitations, Benchling's traditional LIMS system can still be a helpful tool for managing laboratory operations and data.


  • ”I am able to keep my sequences and primers very organized by putting detailed descriptions/sections. Also, the assembly tools make cloning more clear and less room for error.”
  • “it's expandability to into other type of work within bio-investigative work”


  • ”This software is a little pricey and so we have to be selective about which users can have access. The other thing is I wish it was easier to have a STAGE and PROD instance where the schemas, data, permissions, etc. are mirrored more regularly.”
  • ”While i get the location and placement of the Projects tab, that has been a frequent headache to me. It brings up issues when projects are shared by other people in the lab and they only allow me to just see the project and not edit it. I feel like there should be a tool where we can take a project someone shares with us, and edit it and save it easily to our own files. Constantly copying and pasting plasmids from one location to another gets annoying after the 30th plasmid.”

“Some functionalities take a little bit of figuring out but overall it's easy to use. Once you know some of the tips and tricks it's quick and instinctive to use” - Sefanne, Laboratory coordinator in Netherlands

LIMS Guide Competitor Matrix

New development in LIMS in 2024

LIMS in 2024 should offer secure APIs to easily connect with your Generative AI or LLM infrastructure. They should also be tailored for data science and AI use cases, so you can easily connect your upstream and downstream biological workflows. Here is an example of the data infrastructure that modern biotech labs are building in 2024.

Conclusions on LIMS

Laboratory Information Management Systems (LIMS) play a crucial role in enhancing efficiency and data management in various laboratory settings. LIMS systems streamline sample tracking, automate workflows, enhance collaboration, ensure regulatory compliance, and empower researchers with powerful data analysis tools. By leveraging these benefits, labs can optimize their research processes, improve data management, and accelerate scientific breakthroughs. Embracing LIMS technology is an investment that not only increases research efficiency but also sets the stage for future growth and success in a highly competitive scientific landscape.

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